IL_6YAL_103
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6YAL|1|2|C|1327, 6YAL|1|2|U|1490, 6YAL|1|2|G|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAL_103 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1168
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6YAL|1|2|U|1325
6YAL|1|2|G|1326
6YAL|1|2|C|1327
6YAL|1|2|A|1328
6YAL|1|2|U|1329
6YAL|1|2|G|1330
6YAL|1|2|G|1331
*
6YAL|1|2|U|1488
6YAL|1|2|C|1489
6YAL|1|2|U|1490
6YAL|1|2|G|1491
6YAL|1|2|U|1492
6YAL|1|2|G|1493
6YAL|1|2|A|1494
6YAL|1|2|U|1495
6YAL|1|2|G|1496
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- beta-globin mRNA
- Chain F
- 40S Ribosomal protein uS3
- Chain M
- 40S ribosomal protein eS10
- Chain W
- 40S ribosomal protein uS10
- Chain e
- 40S ribosomal protein uS14
- Chain f
- 40S ribosomal protein eS31
- Chain j
- eukaryotic translation initiation factor 1A
Coloring options: