IL_6YAM_018

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

6YAM|1|2|U|351, 6YAM|1|2|C|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAM_018 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1311

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6YAM|1|2|U|349
6YAM|1|2|A|350
6YAM|1|2|U|351
6YAM|1|2|C|352
6YAM|1|2|A|353
6YAM|1|2|A|354
*
6YAM|1|2|U|386
6YAM|1|2|G|387
6YAM|1|2|A|388
6YAM|1|2|C|389
6YAM|1|2|C|390
6YAM|1|2|A|391
6YAM|1|2|C|392
6YAM|1|2|G|393

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein eS8

Chain N

40S ribosomal protein uS17

Chain Z

40S ribosomal protein uS12