IL_6YAM_024
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCACUC*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 6YAM|1|2|G|497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAM_024 not in the Motif Atlas
- Homologous match to IL_4V88_408
- Geometric discrepancy: 0.1302
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6YAM|1|2|C|481
6YAM|1|2|C|482
6YAM|1|2|A|483
6YAM|1|2|C|484
6YAM|1|2|U|485
6YAM|1|2|C|486
*
6YAM|1|2|G|496
6YAM|1|2|G|497
6YAM|1|2|A|498
6YAM|1|2|G|499
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein eS4
- Chain a
- 40S ribosomal protein eS24
- Chain k
- ATP-binding cassette sub-family E member 1 (ABCE1)
Coloring options: