IL_6YAM_048
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 6YAM|1|2|G|929
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAM_048 not in the Motif Atlas
- Homologous match to IL_4V88_431
- Geometric discrepancy: 0.0978
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6YAM|1|2|C|927
6YAM|1|2|G|928
6YAM|1|2|G|929
6YAM|1|2|G|930
6YAM|1|2|G|931
*
6YAM|1|2|C|1003
6YAM|1|2|A|1004
6YAM|1|2|A|1005
6YAM|1|2|G|1006
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein eS1
- Chain P
- ribosomal protein uS15
- Chain b
- 40S ribosomal protein eS26
- Chain v
- Eukaryotic translation initiation factor 3 subunit C
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