3D structure

PDB id
6YAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGCAUGG*UCUGUGAUG
Length
16 nucleotides
Bulged bases
6YAM|1|2|C|1327, 6YAM|1|2|U|1490, 6YAM|1|2|G|1493
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YAM_103 not in the Motif Atlas
Homologous match to IL_8P9A_439
Geometric discrepancy: 0.1168
The information below is about IL_8P9A_439
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86012.1
Basepair signature
cWW-tHS-tWH-cWH-cWW-L-L-cWW
Number of instances in this motif group
1

Unit IDs

6YAM|1|2|U|1325
6YAM|1|2|G|1326
6YAM|1|2|C|1327
6YAM|1|2|A|1328
6YAM|1|2|U|1329
6YAM|1|2|G|1330
6YAM|1|2|G|1331
*
6YAM|1|2|U|1488
6YAM|1|2|C|1489
6YAM|1|2|U|1490
6YAM|1|2|G|1491
6YAM|1|2|U|1492
6YAM|1|2|G|1493
6YAM|1|2|A|1494
6YAM|1|2|U|1495
6YAM|1|2|G|1496

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 3
beta-globin mRNA
Chain F
40S ribosomal protein uS3
Chain M
40S ribosomal protein eS10
Chain W
40S ribosomal protein uS10
Chain e
ribosomal protein uS14
Chain f
ribosomal protein eS31
Chain j
eukaryotic translation initiation factor 1A

Coloring options:


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