IL_6YAN_015

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6YAN|1|2|U|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_015 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3671

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6YAN|1|2|C|213
6YAN|1|2|A|214
6YAN|1|2|U|215
6YAN|1|2|U|216
*
6YAN|1|2|A|293
6YAN|1|2|C|294
6YAN|1|2|C|295
6YAN|1|2|U|296
6YAN|1|2|C|297
6YAN|1|2|G|298
6YAN|1|2|G|299
6YAN|1|2|G|300

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

40S ribosomal protein S8