IL_6YAN_018

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

6YAN|1|2|U|351, 6YAN|1|2|C|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_018 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1364

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6YAN|1|2|U|349
6YAN|1|2|A|350
6YAN|1|2|U|351
6YAN|1|2|C|352
6YAN|1|2|A|353
6YAN|1|2|A|354
*
6YAN|1|2|U|386
6YAN|1|2|G|387
6YAN|1|2|A|388
6YAN|1|2|C|389
6YAN|1|2|C|390
6YAN|1|2|A|391
6YAN|1|2|C|392
6YAN|1|2|G|393

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S8

Chain N

Ribosomal protein S11

Chain Z

40S ribosomal protein uS12