IL_6YAN_024

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

6YAN|1|2|G|497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YAN_024 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.1236

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6YAN|1|2|C|481
6YAN|1|2|C|482
6YAN|1|2|A|483
6YAN|1|2|C|484
6YAN|1|2|U|485
6YAN|1|2|C|486
*
6YAN|1|2|G|496
6YAN|1|2|G|497
6YAN|1|2|A|498
6YAN|1|2|G|499

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain a

40S ribosomal protein S24