IL_6YAN_032
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- GUCGCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6YAN|1|2|A|618, 6YAN|1|2|U|620, 6YAN|1|2|U|621
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAN_032 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1904
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YAN|1|2|G|601
6YAN|1|2|U|602
6YAN|1|2|C|603
6YAN|1|2|G|604
6YAN|1|2|C|605
6YAN|1|2|A|606
6YAN|1|2|G|607
*
6YAN|1|2|C|614
6YAN|1|2|G|615
6YAN|1|2|G|616
6YAN|1|2|U|617
6YAN|1|2|A|618
6YAN|1|2|A|619
6YAN|1|2|U|620
6YAN|1|2|U|621
6YAN|1|2|C|622
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- histone 4 (H4) mRNA
- Chain F
- Ribosomal protein S3
- Chain Z
- 40S ribosomal protein uS12
- Chain i
- 40S ribosomal protein eS30
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