IL_6YAN_068
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 6YAN|1|2|U|1490, 6YAN|1|2|G|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YAN_068 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1392
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6YAN|1|2|U|1329
6YAN|1|2|G|1330
6YAN|1|2|G|1331
*
6YAN|1|2|U|1488
6YAN|1|2|C|1489
6YAN|1|2|U|1490
6YAN|1|2|G|1491
6YAN|1|2|U|1492
6YAN|1|2|G|1493
6YAN|1|2|A|1494
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Ribosomal protein S3
- Chain M
- 40S ribosomal protein eS10
- Chain W
- Ribosomal_S10 domain-containing protein
- Chain e
- ribosomal protein uS14
- Chain f
- ribosomal protein eS31
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