IL_6YDP_005

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_005 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.1785

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

6YDP|1|AA|C|78
6YDP|1|AA|C|79
*
6YDP|1|AA|G|103
6YDP|1|AA|A|104
6YDP|1|AA|G|105

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AQ

uS17m

Chain Ac

Mitochondrial ribosomal protein S25

Chain Aj

mS34