IL_6YDP_008

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_008 not in the Motif Atlas

Geometric match to IL_1NTA_003

Geometric discrepancy: 0.2536

The information below is about IL_1NTA_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6YDP|1|AA|G|116
6YDP|1|AA|C|117
6YDP|1|AA|A|118
6YDP|1|AA|C|119
*
6YDP|1|AA|G|133
6YDP|1|AA|C|134

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AO

uS15m

Chain AQ

uS17m

Chain Aj

mS34

Chain An

Aurora kinase A interacting protein 1