IL_6YDP_011

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_011 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1623

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6YDP|1|AA|G|190
6YDP|1|AA|C|191
6YDP|1|AA|C|192
6YDP|1|AA|A|193
6YDP|1|AA|U|194
*
6YDP|1|AA|A|208
6YDP|1|AA|C|209

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AP

28S ribosomal protein S16, mitochondrial

Chain Ac

Mitochondrial ribosomal protein S25

Chain Ad

Mitochondrial ribosomal protein S26