IL_6YDP_023

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUACUACUCG*CCUAAAAC

Length

18 nucleotides

Bulged bases

6YDP|1|AA|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_023 not in the Motif Atlas

Geometric match to IL_6UFH_002

Geometric discrepancy: 0.3709

The information below is about IL_6UFH_002

Detailed Annotation

10x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_22278.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6YDP|1|AA|G|491
6YDP|1|AA|U|492
6YDP|1|AA|A|493
6YDP|1|AA|C|494
6YDP|1|AA|U|495
6YDP|1|AA|A|496
6YDP|1|AA|C|497
6YDP|1|AA|U|498
6YDP|1|AA|C|499
6YDP|1|AA|G|500
*
6YDP|1|AA|C|507
6YDP|1|AA|C|508
6YDP|1|AA|U|509
6YDP|1|AA|A|510
6YDP|1|AA|A|511
6YDP|1|AA|A|512
6YDP|1|AA|A|513
6YDP|1|AA|C|514

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain AO

uS15m

Chain An

Aurora kinase A interacting protein 1