IL_6YDP_036
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 6YDP|1|AA|C|844, 6YDP|1|AA|A|929
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_036 not in the Motif Atlas
- Geometric match to IL_5J7L_058
- Geometric discrepancy: 0.1313
- The information below is about IL_5J7L_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YDP|1|AA|C|843
6YDP|1|AA|C|844
6YDP|1|AA|G|845
*
6YDP|1|AA|C|927
6YDP|1|AA|A|928
6YDP|1|AA|A|929
6YDP|1|AA|G|930
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AV
- fMet-tRNAMet (P site)
- Chain AX
- mRNA
- Chain An
- Aurora kinase A interacting protein 1
- Chain BC
- Elongation factor G, mitochondrial
Coloring options: