IL_6YDP_041
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAG*CAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_041 not in the Motif Atlas
- Geometric match to IL_4V88_468
- Geometric discrepancy: 0.2258
- The information below is about IL_4V88_468
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6YDP|1|AA|C|860
6YDP|1|AA|A|861
6YDP|1|AA|A|862
6YDP|1|AA|G|863
*
6YDP|1|AA|C|907
6YDP|1|AA|A|908
6YDP|1|AA|A|909
6YDP|1|AA|G|910
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain An
- Aurora kinase A interacting protein 1
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- Elongation factor G, mitochondrial
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