IL_6YDP_048
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUUA*UUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_048 not in the Motif Atlas
- Geometric match to IL_3R2D_002
- Geometric discrepancy: 0.1792
- The information below is about IL_3R2D_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6YDP|1|BA|A|70
6YDP|1|BA|U|71
6YDP|1|BA|U|72
6YDP|1|BA|A|73
*
6YDP|1|BA|U|92
6YDP|1|BA|U|93
6YDP|1|BA|U|94
6YDP|1|BA|U|95
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B1
- Mitochondrial ribosomal protein L28
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BI
- Mitochondrial ribosomal protein L9
- Chain BP
- uL15m
- Chain Bn
- Mitochondrial ribosomal protein L51
- Chain Bv
- mL64
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