IL_6YDP_049
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAAGUAU*AGAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_049 not in the Motif Atlas
- Geometric match to IL_5J7L_251
- Geometric discrepancy: 0.1404
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6YDP|1|BA|A|73
6YDP|1|BA|A|74
6YDP|1|BA|A|75
6YDP|1|BA|G|76
6YDP|1|BA|U|77
6YDP|1|BA|A|78
6YDP|1|BA|U|79
*
6YDP|1|BA|A|87
6YDP|1|BA|G|88
6YDP|1|BA|A|89
6YDP|1|BA|A|90
6YDP|1|BA|A|91
6YDP|1|BA|U|92
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B1
- Mitochondrial ribosomal protein L28
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BI
- Mitochondrial ribosomal protein L9
- Chain BP
- uL15m
- Chain Bn
- Mitochondrial ribosomal protein L51
- Chain Bv
- mL64
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