IL_6YDP_054

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

6YDP|1|BA|G|348, 6YDP|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_054 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1304

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6YDP|1|BA|G|242
6YDP|1|BA|A|243
6YDP|1|BA|A|244
6YDP|1|BA|A|245
6YDP|1|BA|C|246
*
6YDP|1|BA|G|346
6YDP|1|BA|U|347
6YDP|1|BA|G|348
6YDP|1|BA|A|349
6YDP|1|BA|U|350
6YDP|1|BA|A|351
6YDP|1|BA|G|352
6YDP|1|BA|C|353

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

uL15m

Chain Bn

Mitochondrial ribosomal protein L51