IL_6YDP_055

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_055 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1417

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6YDP|1|BA|G|249
6YDP|1|BA|A|250
6YDP|1|BA|C|251
*
6YDP|1|BA|G|341
6YDP|1|BA|C|342
6YDP|1|BA|C|343

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B7

Mitochondrial ribosomal protein L34

Chain BF

Mitochondrial ribosomal protein L4