IL_6YDP_059
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAG*CUAAC
- Length
- 8 nucleotides
- Bulged bases
- 6YDP|1|BA|A|323, 6YDP|1|BA|U|335, 6YDP|1|BA|A|336, 6YDP|1|BA|A|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_059 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.1058
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YDP|1|BA|G|322
6YDP|1|BA|A|323
6YDP|1|BA|G|324
*
6YDP|1|BA|C|334
6YDP|1|BA|U|335
6YDP|1|BA|A|336
6YDP|1|BA|A|337
6YDP|1|BA|C|338
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain BD
- uL2m
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BW
- uL22m
- Chain Bi
- Mitochondrial ribosomal protein L45
Coloring options: