IL_6YDP_067
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAACU*AUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_067 not in the Motif Atlas
- Homologous match to IL_9DFE_050
- Geometric discrepancy: 0.4335
- The information below is about IL_9DFE_050
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
6YDP|1|BA|G|682
6YDP|1|BA|U|683
6YDP|1|BA|A|684
6YDP|1|BA|A|685
6YDP|1|BA|C|686
6YDP|1|BA|U|687
*
6YDP|1|BA|A|694
6YDP|1|BA|U|695
6YDP|1|BA|A|696
6YDP|1|BA|C|697
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain BW
- uL22m
- Chain BX
- uL23m
- Chain Bi
- Mitochondrial ribosomal protein L45
- Chain Bw
- 39S ribosomal protein S30, mitochondrial
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