IL_6YDP_072

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_072 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.0871

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6YDP|1|BA|G|801
6YDP|1|BA|G|802
6YDP|1|BA|A|803
6YDP|1|BA|A|804
*
6YDP|1|BA|U|988
6YDP|1|BA|C|989

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BE

ICT1

Chain BO

uL14m

Chain BT

Mitochondrial ribosomal protein L19