IL_6YDP_077

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

6YDP|1|BA|U|895, 6YDP|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_077 not in the Motif Atlas

Geometric match to IL_4V9F_067

Geometric discrepancy: 0.1125

The information below is about IL_4V9F_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6YDP|1|BA|U|884
6YDP|1|BA|G|885
*
6YDP|1|BA|U|894
6YDP|1|BA|U|895
6YDP|1|BA|A|896
6YDP|1|BA|A|897

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BD

uL2m