IL_6YDP_088
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCU*AAAA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_088 not in the Motif Atlas
- Geometric match to IL_7RQB_031
- Geometric discrepancy: 0.2053
- The information below is about IL_7RQB_031
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YDP|1|BA|U|1192
6YDP|1|BA|C|1193
6YDP|1|BA|U|1194
*
6YDP|1|BA|A|1208
6YDP|1|BA|A|1209
6YDP|1|BA|A|1210
6YDP|1|BA|A|1211
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain B6
- bL33m
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BS
- Mitochondrial ribosomal protein L18
- Chain Bb
- Mitochondrial ribosomal protein L38
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