IL_6YDP_089

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_089 not in the Motif Atlas

Geometric match to IL_4LFB_004

Geometric discrepancy: 0.2085

The information below is about IL_4LFB_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

6YDP|1|BA|U|1194
6YDP|1|BA|A|1195
6YDP|1|BA|G|1196
*
6YDP|1|BA|C|1207
6YDP|1|BA|A|1208

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B0

Mitochondrial ribosomal protein L27

Chain B8

Mitochondrial ribosomal protein L35

Chain Bb

Mitochondrial ribosomal protein L38