IL_6YDP_103
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUAAU*AUUAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_103 not in the Motif Atlas
- Geometric match to IL_4QLM_002
- Geometric discrepancy: 0.3888
- The information below is about IL_4QLM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74322.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YDP|1|BA|G|1507
6YDP|1|BA|A|1508
6YDP|1|BA|U|1509
6YDP|1|BA|A|1510
6YDP|1|BA|A|1511
6YDP|1|BA|U|1512
*
6YDP|1|BA|A|1534
6YDP|1|BA|U|1535
6YDP|1|BA|U|1536
6YDP|1|BA|A|1537
6YDP|1|BA|A|1538
6YDP|1|BA|C|1539
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B9
- Ribosomal protein
- Chain BN
- uL13m
- Chain Bx
- Mitochondrial ribosomal protein S18A
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