IL_6YDW_015
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUGCCAG*CGGUCAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6YDW|1|AA|U|257, 6YDW|1|AA|C|258, 6YDW|1|AA|U|260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDW_015 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.3218
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YDW|1|AA|G|241
6YDW|1|AA|U|242
6YDW|1|AA|G|243
6YDW|1|AA|C|244
6YDW|1|AA|C|245
6YDW|1|AA|A|246
6YDW|1|AA|G|247
*
6YDW|1|AA|C|254
6YDW|1|AA|G|255
6YDW|1|AA|G|256
6YDW|1|AA|U|257
6YDW|1|AA|C|258
6YDW|1|AA|A|259
6YDW|1|AA|U|260
6YDW|1|AA|A|261
6YDW|1|AA|C|262
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain Ai
- mS33
- Chain BC
- Elongation factor G, mitochondrial
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