IL_6YEF_038

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6YEF|1|A|U|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_038 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.1635

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6YEF|1|A|G|1075
6YEF|1|A|A|1076
6YEF|1|A|U|1077
6YEF|1|A|G|1078
*
6YEF|1|A|C|1165
6YEF|1|A|G|1166
6YEF|1|A|C|1167

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain P

50S ribosomal protein L16