IL_6YEF_127
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6YEF|1|a|A|540, 6YEF|1|a|U|542, 6YEF|1|a|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YEF_127 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1726
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YEF|1|a|G|523
6YEF|1|a|U|524
6YEF|1|a|G|525
6YEF|1|a|C|526
6YEF|1|a|C|527
6YEF|1|a|A|528
6YEF|1|a|G|529
*
6YEF|1|a|C|536
6YEF|1|a|G|537
6YEF|1|a|G|538
6YEF|1|a|U|539
6YEF|1|a|A|540
6YEF|1|a|A|541
6YEF|1|a|U|542
6YEF|1|a|A|543
6YEF|1|a|C|544
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain v
- mRNA
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