IL_6YEF_166
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YEF_166 not in the Motif Atlas
- Homologous match to IL_5J7L_063
- Geometric discrepancy: 0.2322
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YEF|1|a|C|1440
6YEF|1|a|C|1441
6YEF|1|a|G|1442
6YEF|1|a|A|1443
6YEF|1|a|A|1444
6YEF|1|a|G|1445
*
6YEF|1|a|C|1477
6YEF|1|a|G|1478
6YEF|1|a|A|1479
6YEF|1|a|A|1480
6YEF|1|a|G|1481
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 50S ribosomal protein L19
- Chain t
- 30S ribosomal protein S20
Coloring options: