IL_6YHS_059

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6YHS|1|1|A|1790, 6YHS|1|1|C|1805, 6YHS|1|1|U|1809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YHS_059 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0745

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6YHS|1|1|U|1787
6YHS|1|1|G|1788
6YHS|1|1|C|1789
6YHS|1|1|A|1790
6YHS|1|1|A|1791
6YHS|1|1|A|1792
6YHS|1|1|C|1793
*
6YHS|1|1|G|1802
6YHS|1|1|G|1803
6YHS|1|1|A|1804
6YHS|1|1|C|1805
6YHS|1|1|G|1806
6YHS|1|1|U|1807
6YHS|1|1|A|1808
6YHS|1|1|U|1809
6YHS|1|1|A|1810

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2