IL_6YLG_101
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUUUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 6YLG|1|1|U|3056, 6YLG|1|1|U|3058
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLG_101 not in the Motif Atlas
- Homologous match to IL_8C3A_127
- Geometric discrepancy: 0.0841
- The information below is about IL_8C3A_127
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- UAA/GAN related
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6YLG|1|1|U|3054
6YLG|1|1|U|3055
6YLG|1|1|U|3056
6YLG|1|1|U|3057
6YLG|1|1|U|3058
6YLG|1|1|G|3059
*
6YLG|1|1|C|3084
6YLG|1|1|G|3085
6YLG|1|1|A|3086
6YLG|1|1|A|3087
6YLG|1|1|G|3088
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain I
- Bud site selection protein 20
- Chain d
- 60S ribosomal protein L31-A
- Chain u
- Ribosome biogenesis protein RLP24
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