IL_6YLH_089

3D structure

PDB id

6YLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - full composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLH_089 not in the Motif Atlas

Homologous match to IL_5TBW_100

Geometric discrepancy: 0.3041

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6YLH|1|1|U|2718
6YLH|1|1|U|2719
6YLH|1|1|G|2720
6YLH|1|1|A|2721
*
6YLH|1|1|U|2735
6YLH|1|1|A|2736
6YLH|1|1|C|2737
6YLH|1|1|A|2738

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

60S ribosomal protein L21-A