IL_6YLH_097
3D structure
- PDB id
- 6YLH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - full composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 6YLH|1|1|A|3142, 6YLH|1|1|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLH_097 not in the Motif Atlas
- Homologous match to IL_8C3A_123
- Geometric discrepancy: 0.09
- The information below is about IL_8C3A_123
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6YLH|1|1|C|3004
6YLH|1|1|A|3005
6YLH|1|1|A|3006
6YLH|1|1|U|3007
*
6YLH|1|1|A|3139
6YLH|1|1|G|3140
6YLH|1|1|A|3141
6YLH|1|1|A|3142
6YLH|1|1|C|3143
6YLH|1|1|G|3144
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain O
- 60S ribosomal protein L16-A
- Chain c
- Ribosome biogenesis protein ALB1
- Chain z
- UPF0642 protein YBL028C
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