IL_6YLX_104

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

6YLX|1|6|G|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLX_104 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.297

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6YLX|1|6|U|26
6YLX|1|6|G|27
*
6YLX|1|6|U|51
6YLX|1|6|G|52
6YLX|1|6|A|53
6YLX|1|6|A|54

Current chains

Chain 6

ITS2

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain K

Proteasome-interacting protein CIC1

Chain o

Ribosome biogenesis protein 15