IL_6YLY_012
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGAC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 6YLY|1|1|A|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLY_012 not in the Motif Atlas
- Geometric match to IL_3TD0_005
- Geometric discrepancy: 0.2367
- The information below is about IL_3TD0_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
6YLY|1|1|A|336
6YLY|1|1|G|337
6YLY|1|1|A|338
6YLY|1|1|C|339
*
6YLY|1|3|G|25
6YLY|1|3|U|26
6YLY|1|3|U|27
Current chains
- Chain 1
- 25S rRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain Y
- 60S ribosomal protein L26-A
Coloring options: