IL_6YLY_039

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAG*CUAUAC

Length

12 nucleotides

Bulged bases

6YLY|1|1|U|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLY_039 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2288

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6YLY|1|1|G|1166
6YLY|1|1|U|1167
6YLY|1|1|U|1168
6YLY|1|1|A|1169
6YLY|1|1|A|1170
6YLY|1|1|G|1171
*
6YLY|1|1|C|1328
6YLY|1|1|U|1329
6YLY|1|1|A|1330
6YLY|1|1|U|1331
6YLY|1|1|A|1332
6YLY|1|1|C|1333

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L7-A

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L33-A