IL_6YLY_040
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGCCGGAAUA*UUA
- Length
- 13 nucleotides
- Bulged bases
- 6YLY|1|1|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLY_040 not in the Motif Atlas
- Geometric match to IL_4M4O_002
- Geometric discrepancy: 0.2023
- The information below is about IL_4M4O_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
6YLY|1|1|U|1173
6YLY|1|1|G|1174
6YLY|1|1|C|1175
6YLY|1|1|C|1176
6YLY|1|1|G|1177
6YLY|1|1|G|1178
6YLY|1|1|A|1179
6YLY|1|1|A|1180
6YLY|1|1|U|1181
6YLY|1|1|A|1182
*
6YLY|1|1|U|1324
6YLY|1|1|U|1325
6YLY|1|1|A|1326
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain S
- 60S ribosomal protein L20-A
- Chain f
- 60S ribosomal protein L33-A
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