IL_6YLY_042
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6YLY|1|1|C|1196, 6YLY|1|1|C|1199, 6YLY|1|1|A|1200, 6YLY|1|1|C|1201, 6YLY|1|1|A|1302, 6YLY|1|1|U|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLY_042 not in the Motif Atlas
- Homologous match to IL_8P9A_280
- Geometric discrepancy: 0.4637
- The information below is about IL_8P9A_280
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34501.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YLY|1|1|G|1194
6YLY|1|1|A|1195
6YLY|1|1|C|1196
6YLY|1|1|A|1197
6YLY|1|1|C|1198
6YLY|1|1|C|1199
6YLY|1|1|A|1200
6YLY|1|1|C|1201
6YLY|1|1|A|1202
6YLY|1|1|A|1203
6YLY|1|1|A|1204
6YLY|1|1|A|1205
*
6YLY|1|1|U|1299
6YLY|1|1|G|1300
6YLY|1|1|A|1301
6YLY|1|1|A|1302
6YLY|1|1|A|1303
6YLY|1|1|A|1304
6YLY|1|1|U|1305
6YLY|1|1|G|1306
6YLY|1|1|G|1307
6YLY|1|1|A|1308
6YLY|1|1|U|1309
6YLY|1|1|G|1310
6YLY|1|1|G|1311
6YLY|1|1|C|1312
6YLY|1|1|G|1313
6YLY|1|1|C|1314
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain F
- 60S ribosomal protein L7-A
- Chain O
- 60S ribosomal protein L16-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain f
- 60S ribosomal protein L33-A
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
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