IL_6YLY_099

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLY_099 not in the Motif Atlas

Geometric match to IL_5TBW_135

Geometric discrepancy: 0.3378

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6YLY|1|1|A|3342
6YLY|1|1|G|3343
6YLY|1|1|A|3344
6YLY|1|1|G|3345
*
6YLY|1|1|C|3360
6YLY|1|1|G|3361
6YLY|1|1|A|3362
6YLY|1|1|U|3363

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A

Chain u

Ribosome biogenesis protein RLP24