IL_6YLY_106

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUC*GAUUUG

Length

11 nucleotides

Bulged bases

6YLY|1|1|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLY_106 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3871

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6YLY|1|1|C|753
6YLY|1|1|G|754
6YLY|1|1|A|755
6YLY|1|1|U|756
6YLY|1|1|C|757
*
6YLY|1|1|G|774
6YLY|1|1|A|775
6YLY|1|1|U|776
6YLY|1|1|U|777
6YLY|1|1|U|778
6YLY|1|1|G|779

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28