IL_6YLY_117

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCC*GUUGU

Length

8 nucleotides

Bulged bases

6YLY|1|1|U|3354, 6YLY|1|1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLY_117 not in the Motif Atlas

Geometric match to IL_5UNE_006

Geometric discrepancy: 0.3901

The information below is about IL_5UNE_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6YLY|1|1|G|3348
6YLY|1|1|C|3349
6YLY|1|1|C|3350
*
6YLY|1|1|G|3353
6YLY|1|1|U|3354
6YLY|1|1|U|3355
6YLY|1|1|G|3356
6YLY|1|1|U|3357

Current chains

Chain 1

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L22-A