IL_6YPU_007

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_007 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3123

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6YPU|1|2|G|73
6YPU|1|2|G|74
6YPU|1|2|A|75
6YPU|1|2|A|76
6YPU|1|2|G|77
*
6YPU|1|2|C|90
6YPU|1|2|G|91
6YPU|1|2|G|92
6YPU|1|2|A|93
6YPU|1|2|C|94

Current chains

Chain 2

16S ribosomal RNA

Nearby chains