IL_6YPU_013

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6YPU|1|2|U|240, 6YPU|1|2|C|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_013 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.09

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6YPU|1|2|G|238
6YPU|1|2|A|239
6YPU|1|2|U|240
6YPU|1|2|U|241
6YPU|1|2|A|242
6YPU|1|2|G|243
*
6YPU|1|2|C|273
6YPU|1|2|G|274
6YPU|1|2|A|275
6YPU|1|2|C|276
6YPU|1|2|G|277
6YPU|1|2|A|278
6YPU|1|2|U|279
6YPU|1|2|C|280

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain r

30S ribosomal protein S17