IL_6YPU_015

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UGAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_015 not in the Motif Atlas

Homologous match to IL_6CZR_125

Geometric discrepancy: 0.1825

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6YPU|1|2|G|288
6YPU|1|2|G|289
*
6YPU|1|2|U|300
6YPU|1|2|G|301
6YPU|1|2|A|302
6YPU|1|2|U|303
6YPU|1|2|C|304

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S16