IL_6YPU_032

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAUU*AGGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_032 not in the Motif Atlas

Homologous match to IL_4LFB_030

Geometric discrepancy: 0.0761

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6YPU|1|2|A|670
6YPU|1|2|G|671
6YPU|1|2|A|672
6YPU|1|2|A|673
6YPU|1|2|U|674
6YPU|1|2|U|675
*
6YPU|1|2|A|709
6YPU|1|2|G|710
6YPU|1|2|G|711
6YPU|1|2|A|712
6YPU|1|2|A|713
6YPU|1|2|U|714

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S6

Chain l

30S ribosomal protein S11

Chain s

30S ribosomal protein S18