IL_6YPU_036

3D structure

PDB id

6YPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YPU_036 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0773

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6YPU|1|2|G|884
6YPU|1|2|G|885
6YPU|1|2|A|886
6YPU|1|2|G|887
6YPU|1|2|U|888
6YPU|1|2|A|889
6YPU|1|2|C|890
6YPU|1|2|G|891
*
6YPU|1|2|U|902
6YPU|1|2|A|903
6YPU|1|2|A|904
6YPU|1|2|A|905
6YPU|1|2|A|906
6YPU|1|2|C|907

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA

Chain m

30S ribosomal protein S12