IL_6YPU_045
3D structure
- PDB id
- 6YPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGAAG*CCACG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YPU_045 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.2813
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YPU|1|4|C|1427
6YPU|1|4|A|1428
6YPU|1|4|G|1429
6YPU|1|4|A|1430
6YPU|1|4|A|1431
6YPU|1|4|G|1432
*
6YPU|1|4|C|1463
6YPU|1|4|C|1464
6YPU|1|4|A|1465
6YPU|1|4|C|1466
6YPU|1|4|G|1467
Current chains
- Chain 4
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain u
- 30S ribosomal protein S20
Coloring options: