IL_6YS3_029

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6YS3|1|b|U|848, 6YS3|1|b|U|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_029 not in the Motif Atlas

Geometric match to IL_9E6Q_013

Geometric discrepancy: 0.3892

The information below is about IL_9E6Q_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

6YS3|1|b|A|846
6YS3|1|b|A|847
6YS3|1|b|U|848
6YS3|1|b|U|849
6YS3|1|b|C|850
*
6YS3|1|b|G|932
6YS3|1|b|U|933
6YS3|1|b|U|934
6YS3|1|b|A|935
6YS3|1|b|U|936

Current chains

Chain b

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L30